Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0762463.2c.4b.7a with 14 members (kelch like family member)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota / Sauria /

Lepidosauria /

Completeness score: 1.00

‹

This HOG has 36 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0762463.2c.4b.7a	938	161	kelch like family member
2	HOG:E0762463.2c.4b.7a.8a.1a	630	48	kelch like family member
3	HOG:E0762463.1b	204	22	kelch like family member
4	HOG:E0762463.2c.4b.7a.8a	104	58	kelch like family member
5	HOG:E0671212	55	6	Derived by automated computational analysis using gene prediction method Gnomon
6	HOG:E0762463.1a	42	3	kelch like family member
7	HOG:E0762463.2c.4b.7a.6b	28	2	kelch like family member
8	HOG:E0762463.2c.4b.7a.6a	28	2	kelch like family member
9	HOG:E0762463.2c.4b	28	228	kelch like family member
10	HOG:E0762463.2c.3a	28	2	kelch like family member
11	HOG:E0762463.2c.2c	28	2	kelch like family member
12	HOG:E0536187	19	22	Derived by automated computational analysis using gene prediction method Gnomon
13	HOG:E0762463.2c.4b.7a.8a.1b	14	2	kelch like family member
14	HOG:E0762463.2c.4b.7a.8a.1a.1c	14	1	kelch like family member
15	HOG:E0762463.2c.4b.7a.7b	14	1	kelch like family member
16	HOG:E0762463.2c.4b.7a.7a	14	1	kelch like family member
17	HOG:E0762463.2c.4b.7a.5b	14	1	kelch like family member
18	HOG:E0762463.2c.4b.7a.5a	14	1	kelch like family member
19	HOG:E0762463.2c.4b.7a.4b	14	1	kelch like family member
20	HOG:E0762463.2c.4b.7a.4a	14	1	kelch like family member
21	HOG:E0762463.2c.4b.7a.3c	14	1	kelch like family member
22	HOG:E0762463.2c.4b.7a.3b	14	1	kelch like family member
23	HOG:E0762463.2c.4b.7a.3a	14	1	kelch like family member
24	HOG:E0762463.2c.4b.7a.2a	14	1	kelch like family member
25	HOG:E0762463.2c.4b.7a.8a.1a.1b	12	1	kelch like family member

Showing 1 to 25 of 36 rows rows per page